Rhamnolipid-aided biodegradation of carbendazim by Rhodococcus sp. D-1: Characteristics, products, and phytotoxicity.
Identifieur interne : 000A96 ( Main/Exploration ); précédent : 000A95; suivant : 000A97Rhamnolipid-aided biodegradation of carbendazim by Rhodococcus sp. D-1: Characteristics, products, and phytotoxicity.
Auteurs : Naling Bai [République populaire de Chine] ; Sheng Wang [République populaire de Chine] ; Rexiding Abuduaini [République populaire de Chine] ; Meinan Zhang [République populaire de Chine] ; Xufen Zhu [République populaire de Chine] ; Yuhua Zhao [République populaire de Chine]Source :
- The Science of the total environment [ 1879-1026 ] ; 2017.
Descripteurs français
- KwdFr :
- MESH :
- composition chimique : Glycolipides, Tensioactifs.
- métabolisme : Benzimidazoles, Carbamates, Rhodococcus.
- Dépollution biologique de l'environnement.
English descriptors
- KwdEn :
- MESH :
- chemical , chemistry : Glycolipids, Surface-Active Agents.
- chemical , metabolism : Benzimidazoles, Carbamates.
- metabolism : Rhodococcus.
- Biodegradation, Environmental.
Abstract
We successfully isolated Rhodococcus sp. D-1, an efficient carbendazim-degrading bacterium that degraded 98.20% carbendazim (200ppm) within 5days. Carbendazim was first processed into 2-aminobenzimidazole, converted to 2-hydroxybenzimidazole, and then further mineralized by subsequent processing. After genomic analysis, we hypothesized that D-1 may express a new kind of enzyme capable of hydrolyzing carbendazim. In addition, the effect of the biodegradable biosurfactant rhamnolipid on the rate and extent of carbendazim degradation was assessed in batch analyses. Notably, rhamnolipid affected carbendazim biodegradation in a concentration-dependent manner with maximum biodegradation efficiency at 50ppm (at the critical micelle concentration, CMC) (97.33% degradation within 2days), whereas 150ppm (3 CMC) rhamnolipid inhibited initial degradation (0.01%, 99.26% degradation within 2 and 5days, respectively). Both carbendazim emulsification and favorable changes in cell surface characteristics likely facilitated its direct uptake and subsequent biodegradation. Moreover, rhamnolipid facilitated carbendazim detoxification. Collectively, these results offer preliminary guidelines for the biological removal of carbendazim from the environment.
DOI: 10.1016/j.scitotenv.2017.03.025
PubMed: 28279530
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Electronic address: yhzhao225@zju.edu.cn.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Microbiology, College of Life Sciences, Zhejiang University, Hangzhou 310058</wicri:regionArea><placeName><settlement type="city">Hangzhou</settlement><region type="province">Zhejiang</region></placeName><orgName type="university">Université de Zhejiang</orgName><placeName><settlement type="city">Hangzhou</settlement><region type="province">Zhejiang</region></placeName></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2017">2017</date><idno type="RBID">pubmed:28279530</idno><idno type="pmid">28279530</idno><idno type="doi">10.1016/j.scitotenv.2017.03.025</idno><idno type="wicri:Area/Main/Corpus">000C33</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000C33</idno><idno type="wicri:Area/Main/Curation">000C33</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000C33</idno><idno type="wicri:Area/Main/Exploration">000C33</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Rhamnolipid-aided biodegradation of carbendazim by Rhodococcus sp. D-1: Characteristics, products, and phytotoxicity.</title><author><name sortKey="Bai, Naling" sort="Bai, Naling" uniqKey="Bai N" first="Naling" last="Bai">Naling Bai</name><affiliation wicri:level="4"><nlm:affiliation>Institute of Microbiology, College of Life Sciences, Zhejiang University, Hangzhou 310058, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Microbiology, College of Life Sciences, Zhejiang University, Hangzhou 310058</wicri:regionArea><placeName><settlement type="city">Hangzhou</settlement><region type="province">Zhejiang</region></placeName><orgName type="university">Université de Zhejiang</orgName><placeName><settlement type="city">Hangzhou</settlement><region type="province">Zhejiang</region></placeName></affiliation></author><author><name sortKey="Wang, Sheng" sort="Wang, Sheng" uniqKey="Wang S" first="Sheng" last="Wang">Sheng Wang</name><affiliation wicri:level="4"><nlm:affiliation>Institute of Microbiology, College of Life Sciences, Zhejiang University, Hangzhou 310058, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Microbiology, College of Life Sciences, Zhejiang University, Hangzhou 310058</wicri:regionArea><placeName><settlement type="city">Hangzhou</settlement><region type="province">Zhejiang</region></placeName><orgName type="university">Université de Zhejiang</orgName><placeName><settlement type="city">Hangzhou</settlement><region type="province">Zhejiang</region></placeName></affiliation></author><author><name sortKey="Abuduaini, Rexiding" sort="Abuduaini, Rexiding" uniqKey="Abuduaini R" first="Rexiding" last="Abuduaini">Rexiding Abuduaini</name><affiliation wicri:level="4"><nlm:affiliation>Institute of Microbiology, College of Life Sciences, Zhejiang University, Hangzhou 310058, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Microbiology, College of Life Sciences, Zhejiang University, Hangzhou 310058</wicri:regionArea><placeName><settlement type="city">Hangzhou</settlement><region type="province">Zhejiang</region></placeName><orgName type="university">Université de Zhejiang</orgName><placeName><settlement type="city">Hangzhou</settlement><region type="province">Zhejiang</region></placeName></affiliation></author><author><name sortKey="Zhang, Meinan" sort="Zhang, Meinan" uniqKey="Zhang M" first="Meinan" last="Zhang">Meinan Zhang</name><affiliation wicri:level="4"><nlm:affiliation>Institute of Microbiology, College of Life Sciences, Zhejiang University, Hangzhou 310058, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Microbiology, College of Life Sciences, Zhejiang University, Hangzhou 310058</wicri:regionArea><placeName><settlement type="city">Hangzhou</settlement><region type="province">Zhejiang</region></placeName><orgName type="university">Université de Zhejiang</orgName><placeName><settlement type="city">Hangzhou</settlement><region type="province">Zhejiang</region></placeName></affiliation></author><author><name sortKey="Zhu, Xufen" sort="Zhu, Xufen" uniqKey="Zhu X" first="Xufen" last="Zhu">Xufen Zhu</name><affiliation wicri:level="4"><nlm:affiliation>Institute of Genetics, College of Life Sciences, Zhejiang University, Hangzhou 310058, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Genetics, College of Life Sciences, Zhejiang University, Hangzhou 310058</wicri:regionArea><placeName><settlement type="city">Hangzhou</settlement><region type="province">Zhejiang</region></placeName><orgName type="university">Université de Zhejiang</orgName><placeName><settlement type="city">Hangzhou</settlement><region type="province">Zhejiang</region></placeName></affiliation></author><author><name sortKey="Zhao, Yuhua" sort="Zhao, Yuhua" uniqKey="Zhao Y" first="Yuhua" last="Zhao">Yuhua Zhao</name><affiliation wicri:level="4"><nlm:affiliation>Institute of Microbiology, College of Life Sciences, Zhejiang University, Hangzhou 310058, PR China. Electronic address: yhzhao225@zju.edu.cn.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Microbiology, College of Life Sciences, Zhejiang University, Hangzhou 310058</wicri:regionArea><placeName><settlement type="city">Hangzhou</settlement><region type="province">Zhejiang</region></placeName><orgName type="university">Université de Zhejiang</orgName><placeName><settlement type="city">Hangzhou</settlement><region type="province">Zhejiang</region></placeName></affiliation></author></analytic><series><title level="j">The Science of the total environment</title><idno type="eISSN">1879-1026</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Benzimidazoles (metabolism)</term><term>Biodegradation, Environmental (MeSH)</term><term>Carbamates (metabolism)</term><term>Glycolipids (chemistry)</term><term>Rhodococcus (metabolism)</term><term>Surface-Active Agents (chemistry)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Benzimidazoles (métabolisme)</term><term>Carbamates (métabolisme)</term><term>Dépollution biologique de l'environnement (MeSH)</term><term>Glycolipides (composition chimique)</term><term>Rhodococcus (métabolisme)</term><term>Tensioactifs (composition chimique)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Glycolipids</term><term>Surface-Active Agents</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Benzimidazoles</term><term>Carbamates</term></keywords><keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Glycolipides</term><term>Tensioactifs</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Rhodococcus</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Benzimidazoles</term><term>Carbamates</term><term>Rhodococcus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Biodegradation, Environmental</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Dépollution biologique de l'environnement</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">We successfully isolated Rhodococcus sp. D-1, an efficient carbendazim-degrading bacterium that degraded 98.20% carbendazim (200ppm) within 5days. Carbendazim was first processed into 2-aminobenzimidazole, converted to 2-hydroxybenzimidazole, and then further mineralized by subsequent processing. After genomic analysis, we hypothesized that D-1 may express a new kind of enzyme capable of hydrolyzing carbendazim. In addition, the effect of the biodegradable biosurfactant rhamnolipid on the rate and extent of carbendazim degradation was assessed in batch analyses. Notably, rhamnolipid affected carbendazim biodegradation in a concentration-dependent manner with maximum biodegradation efficiency at 50ppm (at the critical micelle concentration, CMC) (97.33% degradation within 2days), whereas 150ppm (3 CMC) rhamnolipid inhibited initial degradation (0.01%, 99.26% degradation within 2 and 5days, respectively). Both carbendazim emulsification and favorable changes in cell surface characteristics likely facilitated its direct uptake and subsequent biodegradation. Moreover, rhamnolipid facilitated carbendazim detoxification. Collectively, these results offer preliminary guidelines for the biological removal of carbendazim from the environment.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">28279530</PMID><DateCompleted><Year>2018</Year><Month>07</Month><Day>20</Day></DateCompleted><DateRevised><Year>2018</Year><Month>12</Month><Day>02</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1879-1026</ISSN><JournalIssue CitedMedium="Internet"><Volume>590-591</Volume><PubDate><Year>2017</Year><Month>Jul</Month><Day>15</Day></PubDate></JournalIssue><Title>The Science of the total environment</Title><ISOAbbreviation>Sci Total Environ</ISOAbbreviation></Journal><ArticleTitle>Rhamnolipid-aided biodegradation of carbendazim by Rhodococcus sp. D-1: Characteristics, products, and phytotoxicity.</ArticleTitle><Pagination><MedlinePgn>343-351</MedlinePgn></Pagination><ELocationID EIdType="pii" ValidYN="Y">S0048-9697(17)30530-2</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.scitotenv.2017.03.025</ELocationID><Abstract><AbstractText>We successfully isolated Rhodococcus sp. D-1, an efficient carbendazim-degrading bacterium that degraded 98.20% carbendazim (200ppm) within 5days. Carbendazim was first processed into 2-aminobenzimidazole, converted to 2-hydroxybenzimidazole, and then further mineralized by subsequent processing. After genomic analysis, we hypothesized that D-1 may express a new kind of enzyme capable of hydrolyzing carbendazim. In addition, the effect of the biodegradable biosurfactant rhamnolipid on the rate and extent of carbendazim degradation was assessed in batch analyses. Notably, rhamnolipid affected carbendazim biodegradation in a concentration-dependent manner with maximum biodegradation efficiency at 50ppm (at the critical micelle concentration, CMC) (97.33% degradation within 2days), whereas 150ppm (3 CMC) rhamnolipid inhibited initial degradation (0.01%, 99.26% degradation within 2 and 5days, respectively). Both carbendazim emulsification and favorable changes in cell surface characteristics likely facilitated its direct uptake and subsequent biodegradation. Moreover, rhamnolipid facilitated carbendazim detoxification. Collectively, these results offer preliminary guidelines for the biological removal of carbendazim from the environment.</AbstractText><CopyrightInformation>Copyright © 2017 Elsevier B.V. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Bai</LastName><ForeName>Naling</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>Institute of Microbiology, College of Life Sciences, Zhejiang University, Hangzhou 310058, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Sheng</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Institute of Microbiology, College of Life Sciences, Zhejiang University, Hangzhou 310058, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Abuduaini</LastName><ForeName>Rexiding</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Institute of Microbiology, College of Life Sciences, Zhejiang University, Hangzhou 310058, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Meinan</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Institute of Microbiology, College of Life Sciences, Zhejiang University, Hangzhou 310058, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhu</LastName><ForeName>Xufen</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>Institute of Genetics, College of Life Sciences, Zhejiang University, Hangzhou 310058, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhao</LastName><ForeName>Yuhua</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Institute of Microbiology, College of Life Sciences, Zhejiang University, Hangzhou 310058, PR China. Electronic address: yhzhao225@zju.edu.cn.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>03</Month><Day>06</Day></ArticleDate></Article><MedlineJournalInfo><Country>Netherlands</Country><MedlineTA>Sci Total Environ</MedlineTA><NlmUniqueID>0330500</NlmUniqueID><ISSNLinking>0048-9697</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D001562">Benzimidazoles</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D002219">Carbamates</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D006017">Glycolipids</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D013501">Surface-Active Agents</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="C418382">rhamnolipid</NameOfSubstance></Chemical><Chemical><RegistryNumber>H75J14AA89</RegistryNumber><NameOfSubstance UI="C006698">carbendazim</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001562" MajorTopicYN="N">Benzimidazoles</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D001673" MajorTopicYN="N">Biodegradation, Environmental</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002219" MajorTopicYN="N">Carbamates</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D006017" MajorTopicYN="N">Glycolipids</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="Y">chemistry</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012240" MajorTopicYN="N">Rhodococcus</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D013501" MajorTopicYN="N">Surface-Active Agents</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="Y">chemistry</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Biodegradation</Keyword><Keyword MajorTopicYN="N">Carbendazim</Keyword><Keyword MajorTopicYN="N">Cell surface hydrophobicity</Keyword><Keyword MajorTopicYN="N">Detoxification</Keyword><Keyword MajorTopicYN="N">Rhamnolipid</Keyword><Keyword MajorTopicYN="N">Zeta potential</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2017</Year><Month>01</Month><Day>01</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2017</Year><Month>03</Month><Day>02</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2017</Year><Month>03</Month><Day>03</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2017</Year><Month>3</Month><Day>11</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2018</Year><Month>7</Month><Day>22</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2017</Year><Month>3</Month><Day>11</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">28279530</ArticleId><ArticleId IdType="pii">S0048-9697(17)30530-2</ArticleId><ArticleId IdType="doi">10.1016/j.scitotenv.2017.03.025</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country><region><li>Zhejiang</li></region><settlement><li>Hangzhou</li></settlement><orgName><li>Université de Zhejiang</li></orgName></list><tree><country name="République populaire de Chine"><region name="Zhejiang"><name sortKey="Bai, Naling" sort="Bai, Naling" uniqKey="Bai N" first="Naling" last="Bai">Naling Bai</name></region><name sortKey="Abuduaini, Rexiding" sort="Abuduaini, Rexiding" uniqKey="Abuduaini R" first="Rexiding" last="Abuduaini">Rexiding Abuduaini</name><name sortKey="Wang, Sheng" sort="Wang, Sheng" uniqKey="Wang S" first="Sheng" last="Wang">Sheng Wang</name><name sortKey="Zhang, Meinan" sort="Zhang, Meinan" uniqKey="Zhang M" first="Meinan" last="Zhang">Meinan Zhang</name><name sortKey="Zhao, Yuhua" sort="Zhao, Yuhua" uniqKey="Zhao Y" first="Yuhua" last="Zhao">Yuhua Zhao</name><name sortKey="Zhu, Xufen" sort="Zhu, Xufen" uniqKey="Zhu X" first="Xufen" last="Zhu">Xufen Zhu</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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